2020-2024
Vaňková Hausnerová V., Shoman M., Kumar D., Schwarz M., Modrák M., Jirát Matějčková J., Mikesková E., Neva S., Herrmannová A., Šiková M., Halada P., Novotná I., Pajer P., Valášek L.S., Převorovský M., Krásný L., Hnilicová J. (2024): RIP-seq reveals RNAs that interact with RNA polymerase and primary sigma factors in bacteria. Nucleic Acids Res. 52 (8): 4604-4626. [PubMed]
Sudzinová P., Šanderová H., Koval' T., Skálová T., Borah N., Hnilicová J., Kouba T., Dohnálek J., Krásný L. (2023): What the Hel: recent advances in understanding rifampicin resistance in bacteria. FEMS Microbiol. Rev. 47 (6): fuac051. [PubMed]
Gracias F. Ruiz-Larrabeiti O., Vaňková Hausnerová V., Pohl R., Klepetářová B., Sýkorová V., Krásný L., Hocek M. (2022): Homologues of epigenetic pyrimidines: 5-alkyl-, 5-hydroxyalkyl and 5-acyluracil and -cytosine nucleotides: synthesis, enzymatic incorporation into DNA and effect on transcription with bacterial RNA polymerase. RSC Chem. Biol. 3 (8): 1069-1075. [PubMed]
Vaňková Hausnerová V., Marvalová O., Šiková M., Shoman M., Havelková J., Kambová M., Janoušková M., Kumar D., Halada P., Schwarz M., Krásný L., Hnilicová J., Pánek J. (2022): Ms1 RNA interacts with the RNA polymerase core in Streptomyces coelicolor and was identified in majority of Actinobacteria using a linguistic gene synteny search. Front. Microbiol. 13: 848536. [PubMed]
Vohradský J., Schwarz M., Ramaniuk O., Ruiz-Larrabeiti O., Vaňková Hausnerová V., Šanderová H., Krásný L. (2021): Kinetic modeling and meta-analysis of the Bacillus subtilis SigB regulon during spore germination and outgrowth. Microorganisms 9 (1): 112. [PubMed]
Chakrapani A., Vaňková Hausnerová V., Ruiz-Larrabeiti O., Pohl R., Krásný L., Hocek M. (2020): Photocaged 5-(Hydroxymethyl)pyrimidine nucleoside phosphoramidites for specific photoactivatable epigenetic labeling of DNA. Org. Lett. 22 (22): 9081-9085. [PubMed]
Kouba T., Koval' T., Sudzinová P., Pospíšil J., Brezovská B., Hnilicová J., Šanderová H., Janoušková M., Šiková M., Halada P., Sýkora M., Barvík I., Nováček J., Trundová M., Dušková J., Skálová T., Chon U., Murakami K.S., Dohnálek J., Krásný L. (2020): Mycobacterial HelD is a nucleic acids-clearing factor for RNA polymerase. Nat. Commun. 11 (1): 6419. [PubMed]
2015-2019
Kouba T., Pospíšil J., Hnilicová J., Šanderová H., Barvík I., Krásný L. (2019): The core and holoenzyme forms of RNA polymerase from Mycobacterium smegmatis. J. Bacteriol. 201 (4):e00583-18. [PubMed]
Šiková M., Janoušková M., Ramaniuk O., Páleníková P., Pospíšil J., Bartl P., Suder A., Pajer P., Kubičková P,. Pavliš O., Hradilová M., Vítovská D., Šanderová H., Převorovský M., Hnilicová J., Krásný L. (2019): Ms1 RNA increases the amount of RNA polymerase in Mycobacterium smegmatis. Mol. Microbiol. 111 (2): 354-372. [PubMed]
Ramaniuk O., Převorovský M., Pospíšil J., Vítovská D., Kofroňová O., Benada O., Schwarz M., Šanderová H., Hnilicová J., Krásný L. (2018): σI from Bacillus subtilis: Impact on gene expression and characterization of σI-dependent transcription that requires new types of promoters with extended -35 and -10 eements. J. Bacteriol. 200 (17): e00251-18. [PubMed]
Vaňková Hausnerová V., Lanctôt C. (2017): Chromatin decondensation is accompanied by a transient increase in transcriptional output. Bio.l Cell 109 (1): 65-79. [PubMed]
Vaňková Hausnerová V., Lanctôt C. (2017): Transcriptional output transiently spikes upon mitotic exit. Sci. Rep. 7 (1): 12607. [PubMed]
2010-2014
Dušková E., Hnilicová J., Staněk D. (2014): CRE promoter sites modulate alternative splicing via p300- mediated histone acetylation. RNA Biol. 11 (7): 865-874. [PubMed]
Hnilicová J., Jirát Matějčková J., Šiková M., Pospíšil J., Halada P., Pánek J., Krásný L. (2014): Ms1, a novel sRNA interacting with the RNA polymerase core in mycobacteria. Nucleic Acids Res. 42 (18): 11763-11776. [PubMed]
Hnilicová J., Hozeifi S., Stejskalová E., Dušková E., Poser I., Humpolíčková J., Hof M., Staněk D. (2013): The C-terminal domain of Brd2 is important for chromatin interaction and regulation of transcription and alternative splicing. Mol. Biol. Cell 24 (22): 3557-3568. [PubMed]
Rabatinová A., Šanderová H., Jirát Matějčková J., Korelusová J., Sojka L., Barvík I., Papoušková V., Sklenár V., Žídek L., Krásný L. (2013): The δ subunit of RNA polymerase is required for rapid changes in gene expression and competitive fitness of the cell. J. Bacteriol. 195 (11): 2603-2611. [PubMed]
Dzijak R., Yildirim S., Kahle M., Novák P., Hnilicová J., Venit T., Hozák P. (2012): Specific nuclear localizing sequence directs two myosin isoforms to the cell nucleus in calmodulin-sensitive manner. PLoS One 7 (1): e30529. [PubMed]
Hnilicová J., Hozeifi S., Dušková E., Icha J., Tománková T., Staněk D. (2011): Histone deacetylase activity modulates alternative splicing. PLoS One 6 (2): e16727. [PubMed]
Hnilicová J., Staněk D. (2011): Where splicing joins chromatin. Nucleus 2 (3): 182-188. [PubMed]
2005-2009
Huranová M., Hnilicová J., Fleischer B., Cvačková Z., Staněk D. (2009:) A mutation linked to retinitis pigmentosa in HPRP31 causes protein instability and impairs its interactions with spliceosomal snRNPs. Hum. Mol. Genet. 18 (11): 2014-2023. [PubMed]
Staněk D., Přidalová-Hnilicová J., Novotný I., Huranová M., Blažíková M., Wen X., Sapra A.K., Neugebauer K.M. (2008): Spliceosomal small nuclear ribonucleoprotein particles repeatedly cycle through Cajal bodies. Mol. Biol. Cell 19 (6): 2534-2543. [PubMed]
Kahle M., Přidalová J., Špaček M., Dzijak R., Hozák P. (2007): Nuclear myosin is ubiquitously expressed and evolutionary conserved in vertebrates. Histochem. Cell Biol. 127: 139-148. [PubMed]