Publications of the Department Members and Students in 2023
Beňová A., Ferenčáková M., Bardová K., Funda J., Procházka J., Spoutil F., Čajka T., Džubanová M., Balcaen T., Kerckhofs G., Willekens W., van Lenthe G.H., Charyyeva A., Alquicer G., Pecinová A., Mráček T., Horáková O., Coupeau R., Hansen M.S., Rossmeisl M., Kopecký J., Tencerová M. (2023): Omega-3 PUFAs prevent bone impairment and bone marrow adiposity in mouse model of obesity. Commun. Biol. 6 (1): 1043. [PubMed]
Budil J., Štenclová P., Kromka A., Lišková P. (2023): Development of the Pseudomonas syringae pv. morsprunorum biofilm monitored in real time using attenuated total reflection Fourier transform infrared measurements in a flow cell chamber. Appl. Spectrosc. 77 (5): 500-512. [PubMed]
Čapková Pavlíková Z., Miletínová P., Roithová A., Pospíšilová K., Záhonová K., Kachale A., Becker T., Durante I.M., Lukeš J., Paris Z., Beznosková P., Valášek L. S. (2023). Ribosomal A-site interactions with near-cognate tRNAs drive stop codon readthrough. doi: 10.1101/2023.06.19.543857. [bioRxiv]
Dejmek M., Brázdová A., Otava T., Pimková Polidarová M., Klíma M., Smola M., Vavřina Z., Buděšínský M., Dračínský M., Liboska R., Bouřa E., Birkuš G., Nencka R. (2023): Vinylphosphonate-based cyclic dinucleotides enhance STING-mediated cancer immunotherapy. Eur. J. Med. Chem. 259: 115685. [PubMed]
Dong L.F., Rohlena J., Zobalová R., Nahácka Z., Rodriguez A.M., Berridge M.V., Neužil J. (2023): Mitochondria on the move: Horizontal mitochondrial transfer in disease and health. J. Cell Biol. 222 (3): e202211044. [PubMed]
Ferenčáková M., Beňová A., Raška I. Jr., Abaffy P., Šindelka R., Džubanová M., Pospíšilová E., Kološtová K., Čajka T., Paclík A., Zikán V., Tencerová M. (2023): Human bone marrow stromal cells: the impact of anticoagulants on stem cell properties. Front. Cell Dev. Biol. 11: 1255823. [PubMed]
Filipi T., Matúšová Z., Abaffy P., Vaňátko O., Turečková J., Benešová S., Kubisková M., Kirdajová D., Záhumenský J., Valihrach L., Anděrová M. (2023): Cortical glia in SOD1(G93A) mice are subtly affected by ALS-like pathology. Sci. Rep. 13 (1): 6538. [PubMed]
Gregório C., Thakur S., Camara Rivero R., Márcia Dos Santos Machado S., Cuenin C., Carreira C., White V., Cree I.A., Vukojevic K., Glavina Durdov M., Bersch Osvaldt A., Ashton-Prolla P., Herceg Z., Talukdar F.R. (2023): Telomere length assessment and molecular characterization of TERT gene promoter in periampullary carcinomas. Gene 873: 147460. [PubMed]
Haas M., Fürhacker P., Hodek J., Stangl P., Alon I., Kainz K., Fajgelj V., Mädel C., Dotzler S., Götzinger F., Ulrychová L., Preuner S., Fortschegger M., Schinnerl D., Walter C., Obrova K., Weber J., Zacharasiewicz A., Lion T. (2023): Detection of viable SARS-CoV-2 on the hands of hospitalized children with COVID-19. Clin. Microbiol. Infect. 29 (9): 1211-1213. [PubMed]
Hejtmánková A., Caisová H., Tomanová T., Španielová H. (2023): The role of the DE and EF loop of BKPyV VP1 in the serological cross-reactivity between subtypes. Virus Res. 324: 199031. [PubMed]
Hovorková M., Červený J., Bumba L., Pelantová H., Cvačka J., Křen V., Renaudet O., Goyard D., Bojarová P. (2023): Advanced high-affinity glycoconjugate ligands of galectins. Bioorg. Chem. 131: 106279. [PubMed]
Hrabalová P., Bohuslavová R., Matějková K., Papoušek F., Sedmera D., Abaffy P., Kolář F., Pavlínková G. (2023): Dysregulation of hypoxia-inducible factor 1α in the sympathetic nervous system accelerates diabetic cardiomyopathy. Cardiovasc. Diabetol. 22 (1): 88. [PubMed]
Hrbáček J., Hanáček V., Kadlečková D., Cirbusová A., Čermák P., Tachezy R., Zachoval R., Saláková M. (2023): Urinary shedding of common DNA viruses and their possible association with bladder cancer: a qPCR-based study. Neoplasma 70 (2): 311-318. [PubMed]
Huber B.A., Meng G., Král J., Ávila Herrera I.M., Izquierdo M.A. (2023): Revision of the South American Ninetinae genus Guaranita (Araneae, Pholcidae). Eur. J. Taxon. 900: 32-80. [Eur. J. Taxon.]
Huber B.A., Meng G., Král J., Ávila Herrera I.M., Izquierdo M.A., Carvalho L S. (2023): High and dry: integrative taxonomy of the Andean spider genus Nerudia (Araneae: Pholcidae). Zool. J. Linn. Soc. 198 (2): 534-591. [OUP]
Huber B.A., Meng G., Valdez-Mondragón A., Král J., Ávila Herrera I.M., Carvalho L.S. (2023). Short-legged daddy-long-leg spiders in North America: the genera Pholcophora and Tolteca (Araneae, Pholcidae). Eur. J. Taxon. 880 (1): 1-89. [Eur J Taxon]
Chaudhari A.S., Chatterjee A., Domingos C.A.O., Andrikopoulos P.C., Liu Y., Andersson I., Schneider B., Lórenz-Fonfría V.A., Fuertes G. (2023): Genetically encoded non-canonical amino acids reveal asynchronous dark reversion of chromophore, backbone, and side-chains in EL222. Protein Sci. 32 (4): e4590. [PubMed]
Iyyappan R., Aleshkina D., Ming H., Dvořan M., Kakavand K., Jansová D., Del Llano E., Gahurova L., Bruce A.W., Mašek T., Pospíšek M., Horvát F., Kubelka M., Jiang Z., Susor A. (2023): The translational oscillation in oocyte and early embryo development. Nucleic Acids Res. 51 (22): 12076-12091. [PubMed]
Kadlečková D., Vinkler M., Tachezy R., Saláková M. (2023): Genome sequence of parvovirus from budgerigar (Melopsittacus undulatus). Microbiol. Resour. Announc. 12 (11): e0045323. [PubMed]
Kertisová A., Žáková L., Macháčková K., Marek A., Šácha P., Pompach P., Jiráček J., Selicharová I. (2023): Insulin receptor Arg717 and IGF-1 receptor Arg704 play a key role in ligand binding and in receptor activation. Open Biol. 13 (11): 230142. [PubMed]
Kliegr T., Jarkovský J., Jiřincová H., Kuchař J., Karel T., Chudán D., Vojíř S., Zavřel M., Šanca O., Tachezy R. (2023): Can variants, reinfection, symptoms and test types affect COVID-19 diagnostic performance? A large-scale retrospective study of AG-RDTs during circulation of Delta and Omicron variants, Czechia, December 2021 to February 2022. Eurosurveillance 28 (38): 2200938. [PubMed]
Konvalinková D., Dolníček F., Hovorková M., Červený J., Kundrát O., Pelantová H., Petrásková L., Cvačka J., Faizulina M., Varghese B., Kovaříček P., Křen V., Lhoták P., Bojarová P. (2023): Glycocalix[4]arenes and their affinity to a library of galectins: the linker matters. Org. Biomol. Chem. 21 (6): 1294-1302. [PubMed]
Křístková B., Rädisch R., Kulik N., Horvat M., Rucká L., Grulich M., Rudroff F., Kádek A., Pátek M., Winkler M., Martínková L. (2023): Scanning aldoxime dehydratase sequence space and characterization of a new aldoxime dehydratase from Fusarium vanettenii. Enzyme Microb. Technol. 164: 110187. [PubMed]
Kuzma J., Zavala-Meneses S.G., Skultéty L., Chmelař D., Fičík J., Palcová L. (2023): Antibiotic resistance and biofilm-forming ability of α-toxin-positive Clostridium septicum isolates worsen patient prognosis. APMIS 131 (8): 434-441. [PubMed]
Látrová K., Dolejšová T., Motlová L., Mikušová G., Bosák J., Snopková K., Šmajs D., Konopásek I., Fišer R. (2023) R-type fonticins produced by Pragia fontium form large pores with high conductance. J. Bacteriol. 205 (1): e0031522. [PubMed]
Le A.V., Větrovský T., Barucic D., Saraiva J.P., Dobbler P.T., Kohout P., Pospíšek M., da Rocha U.N., Kléma J., Baldrian P. (2023): Improved recovery and annotation of genes in metagenomes through the prediction of fungal introns. Mol. Ecol. Resour. 23 (8): 1800-1811. [PubMed]
Liu Y., Chaudhari A.S., Chatterjee A, Andrikopoulos P.C., Picchiotti A., Rebarz M., Kloz M., Lorenz-Fonfria V.A., Schneider B., Fuertes G. (2023): Sub-millisecond photoinduced dynamics of free and EL222-bound FMN by stimulated Raman and visible absorption spectroscopies. Biomolecules 13 (1): 161. [PubMed]
Lobaz V., Liščáková V., Sedlák F., Musil D., Petrova S.L., Šeděnková I., Pánek J., Kučka J., Konefał R., Tihlaříková E., Neděla V., Pankrác J., Šefc L., Hrubý M., Šácha P., Štěpánek P. (2023): Tuning polymer-blood and polymer-cytoplasm membrane interactions by manipulating the architecture of poly(2-oxazoline) triblock copolymers. Colloids Surf. B Biointerfaces 231: 113564. [PubMed]
Lukšíková K., Pavlica T., Altmanová M., Štundlová J., Pelikánová Š, Simanovsky S.A., Krysanov E.Y., Jankásek M., Hiřman M., Reichard M., Ráb P., Sember A. (2023): Conserved satellite DNA motif and lack of interstitial telomeric sites in highly rearranged African Nothobranchius killifish karyotypes. J. Fish Biol. 103 (6): 1501-1514. [PubMed]
Marková H., Tarkowská D., Čečetka P., Kočová M., Rothová O., Holá D. (2023): Contents of endogenous brassinosteroids and the response to drought and/or exogenously applied 24-epibrassinolide in two different maize leaves. Front. Plant Sci. 14: 1139162 [PubMed]
Matúšová Z., Hol E.M., Pěkný M., Kubista M., Valihrach L. (2023): Reactive astrogliosis in the era of single-cell transcriptomics. Front. Cell. Neurosci. 17: 1173200. [PubMed]
Müllerová M., Hovorková M., Závodná T., Červenková Štastná L., Krupková A., Hamala V., Nováková K., Topinka J., Bojarová P., Strašák T. (2023): Lactose-functionalized carbosilane glycodendrimers are highly potent multivalent ligands for galectin-9 binding: increased glycan affinity to galectins correlates with aggregation behavior. Biomacromolecules 24 (11): 4705-4717. [PubMed]
Novák K., Valčíková T., Samaké K., Bjelka M. (2023): Association of variants in innate immune genes TLR4 and TLR5 with reproductive and milk production traits in Czech Simmental cattle. Genes 15 (1): 24. [PubMed]
Osičková A., Knoblochová Š., Bumba L., Man P., Kalaninová Z., Lepesheva A., Jurnečka D., Čížková M., Biedermannová L., Goldsmith J.A., Maynard J.A., McLellan J.S., Osička R., Šebo P., Mašín J. (2023): A conserved tryptophan in the acylated segment of RTX toxins controls their β2 integrin-independent cell penetration. J. Biol. Chem. 299 (8): 104978. [PubMed]
Plecitá-Hlavatá L., Brázdová A., Křivonosková M., Hu C.J., Phang T., Tauber J., Li M., Zhang H., Hoetzenecker K., Crnkovic S., Kwapiszewska G., Stenmark K.R. (2023): Microenvironmental regulation of T-cells in pulmonary hypertension. Front. Immunol. 14: 1223122. [PubMed]
Princová J., Salat-Canela C., Daněk P., Marešová A., de Cubas L., Bähler J., Ayté J., Hidalgo E., Převorovský M. (2023): Perturbed fatty-acid metabolism is linked to localized chromatin hyperacetylation, increased stress-response gene expression and resistance to oxidative stress. PLoS Genet. 19 (1): e1010582. [PubMed]
Rahman W.U., Fišer R., Osička R. (2023): Kingella kingae RtxA toxin interacts with sialylated gangliosides. Microb. Pathog. 181: 106200. [PubMed]
Ryabchenko B., Šroller V., Horníková L., Lovtsov A., Forstová J., Huérfano S. (2023): The interactions between PML nuclear bodies and small and medium size DNA viruses. Virol. J. 20 (1): 82. [PubMed]
Samaké K., Novák K. (2023). Haplotype disequilibrium in the TLR genes of Czech red pied cattle. Diversity-Basel 15 (7): 811. [MDPI]
Samoilova E., Tejnecký V., Kopecký J., Drábek O., Šťovíček A., Vokurková P., Rapoport D., Němeček K., Burešová-Faitová A., Chotěborský R., Patrmanová T., Hromasová M., Ságová‐Marečková M. (2023): The structure of microbial communities in redoximorphic microsites of Gleysol. Eur. J. Soil Sci. 74 (3): e13369. [Wiley Onliny Library]
Šich R., Komnenov M., Trajkovska M., Just P., Střeštík V., Rückl K. (2023). New records of Larinia elegans (Araneae: Araneidae) from Czechia and North Macedonia with remarks on its ecology. Arachnol. Lett. 65 (1): 8-12. [BioOne]
Šigutová H., Šigut M., Pyszko P., Kostovčík M., Kolařík M., Drozd P. (2023): Seasonal shifts in bacterial and fungal microbiomes of leaves and associated leaf-mining larvae reveal persistence of core taxa regardless of diet. Microbiol. Spectr. 11 (1): e0316022. [PubMed]
Šmahel M., Nunvář J. (2023): Bioinformatics analysis of immune characteristics in tumors with alternative carcinogenesis pathways induced by human papillomaviruses. Virol. J. 20 (1): 287. [PubMed]
Smělíková E., Dřevínek P., Nyč O., Brajerová M., Tkadlec J., Krutová M. (2023): To screen or not to screen medical students for carriage of multidrug-resistant pathogens? J. Hosp. Infect. 140: 15-23. [PubMed]
Součková K., Jasík M., Sovadinová I., Sember A., Sychrová E., Konieczna A., Bystrý V., Dyková I., Blažek R., Lukšíková K., Pavlica T., Jankásek M., Altmanová M., Žák J., Zbončáková A., Reichard M., Slabý O. (2023): From fish to cells: Establishment of continuous cell lines from embryos of annual killifish Nothobranchius furzeri and N. kadleci. Aquat. Toxicol. 259: 106517. [PubMed]
Soukup J., Moško T., Kereïche S., Holada K. (2023): Large extracellular vesicles transfer more prions and infect cell culture better than small extracellular vesicles. Biochem. Biophys. Res. Commun. 687: 149208. [PubMed]
Španielová H., Brdička R. (2023): Oncolytic viruses and cancer treatment. Klin. Onkol. 36 (1): 12-27. [PubMed]
Štach M., Pytlík R., Šmilauerová K., Rychlá J., Mucha M., Musil J., Koladiya A., Nemec M., Petráčková M., Kaštánková I., Pecherková P., Šrámková L., Polgárová K., Trněný M., Lesný P., Vydra J., Otáhal P. (2023): Characterization of the input material quality for the production of tisagenlecleucel by multiparameter flow cytometry and its relation to the clinical outcome. Pathol. Oncol. Res. 29: 1610914. [PubMed]
Švarcová M., Větrovský T., Kolařík M., Hubka V. (2023): Defining the relationship between phylogeny, clinical manifestation, and phenotype for Trichophyton mentagrophytes/interdigitale complex; a literature review and taxonomic recommendations. Med. Mycol. 61 (5): myad042. [Pubmed]
Szűts T., Szabó K., Zamani A., Forman M., Miller J., Oger P., Fabregat M., Kovács G., Gál J. (2023): A study in scarlet: Integrative taxonomy of the spider genus Loureedia (Araneae: Eresidae). Diversity-Basel 15 (2): 238. [MDPI]
Tomasetti M., Monaco F., Strogovets O., Volpini L., Valentino M., Amati M., Neužil J., Santarelli L. (2023): ATG5 as biomarker for early detection of malignant mesothelioma. BMC Res Notes 16 (1): 61. [PubMed]
Trsová I., Hruštincová A., Krejčík Z., Kundrat D., Holoubek A., Štaflová K., Janštová L., Vaniková Š., Szikszai K., Klema J., Ryšavý P., Beličková M., Kaisrlíková M., Veselá J., Čermák J., Jonášová A., Dostál J., Frič J., Musil J., Dostálová Merkerová M. (2023): Expression of circular RNAs in myelodysplastic neoplasms and their association with mutations in the splicing factor gene SF3B1. Mol. Oncol. 17 (12): 2565-2583. [PubMed]
Veselská T., Švec K., Kostovčík M., Peral-Aranega E., Garcia-Fraile P., Křížková B., Havlíček V., Saati-Santamaría Z., Kolařík M. (2023): Proportions of taxa belonging to the gut core microbiome change throughout the life cycle and season of the bark beetle Ips typographus. FEMS Microbiol. Ecol. 99 (8): fiad072. [PubMed]
Vinkler M., Fiddaman S.R., Těšický M., O'Connor E.A., Savage A.E., Lenz T.L., Smith A.L., Kaufman J., Bolnick D.I., Davies C.S., Dedić N., Flies A.S., Samblás M.M.G., Henschen A.E., Novák K., Palomar G., Raven N., Samaké K., Slade J., Veetil N.K., Voukali E., Höglund J., Richardson D.S., Westerdahl H. (2023): Understanding the evolution of immune genes in jawed vertebrates. J. Evol .Biol. 36 (6): 847-873. [PubMed]
Voleníková A., Lukšíková K., Mora P., Pavlica T., Altmanová M., Štundlová J., Pelikánová Š., Simanovsky S.A., Jankásek M., Reichard M., Nguyen P., Sember A. (2023): Fast satellite DNA evolution in Nothobranchius annual killifishes. Chromosome Res. 31 (4): 33. [PubMed]
Vráblíková A., Brezani V., Pšíkal I., Fraiberk M., Šebela M, Fojtíková M., Kulich P., Hezová R., Mašek J. (2023): Development of modern immunization agent against bovine papillomavirus type 1 infection based on BPV1 L1 recombinant protein. Front. Vet. Sci. 10: 1116661. [PubMed]
Vráblíková A., Fojtíková M., Hezová R, Šimečková P., Brezani V., Straková N., Fraiberk M., Kotouček J., Mašek J., Pšíkal I. (2023): UV-C irradiation as an effective tool for sterilization of porcine chimeric VP1-PCV2bCap recombinant vaccine. Sci. Rep. 13 (1): 19337. [PubMed]
Publications only in Czech language are excluded from this list.