Publications of Department Members and Students in 2021
Aleshkina D., Iyyappan R., Lin C.J., Mašek T., Pospíšek M., Šušor A. (2021): ncRNA BC1 influences translation in the oocyte. RNA Biol. 18 (11): 1893-1904 [PubMed]
Ávila Herrera I.M., Král J., Pastuchová M., Forman M., Musilová J., Kořínková T., Šťáhlavský F., Zrzavá M., Nguyen P., Just P., Haddad C.R., Hiřman M., Koubová M., Sadílek D., Huber B.A. (2021): Evolutionary pattern of karyotypes and meiosis in pholcid spiders (Araneae: Pholcidae): implications for reconstructing chromosome evolution of araneomorph spiders. BMC Ecol. Evol. 21 (1): 75. [PubMed]
Bohatá J., Horváthová V., Pavlíková M., Stibůrková B. (2021): Circulating microRNA alternations in primary hyperuricemia and gout. Arthritis Res. Ther. 23 (1): 186. [PubMed]
Bora P., Gahurová L., Mašek T., Hauserová A., Potěšil D., Jansová D., Susor A., Zdráhal Z., Ajduk A., Pospíšek M., Bruce A.W. (2021): p38-MAPK mediated translation regulation during early blastocyst development is required for primitive endoderm differentiation in mice. Commun. Biol. 4: 788. [PubMed]
Ezrová Z., Nahácka Z, Štursa J., Werner L., Vlčák E., Králová Viziová P., Berridge M.V., Sedláček R., Zobalová R., Rohlena J, Boukalová Š., Neužil J. (2021): SMAD4 loss limits the vulnerability of pancreatic cancer cells to complex I inhibition via promotion of mitophagy. Oncogene 40 (14): 2539-2552. [PubMed]
Guaragnella N., Ždralević M., Palková Z., Giannattasio S. (2021): Analysis of mitochondrial retrograde signaling in yeast model systems. In: Weissig V., Edeas M. (eds): Mitochondrial Medicine. Methods in Molecular Biology 2276. Springer, New York, NY, pp. 87-102. [PubMed]
Hájek J., Bieringer S., Voráčová K., Macho M., Saurav K., Delawská K., Divoká P., Fišer R., Mikušová G., Cheel J., Fewer D.P., Vu D.L., Paichlová J., Riepl H., Hrouzek P. (2021): Semi-synthetic puwainaphycin/minutissamide cyclic lipopeptides with improved antifungal activity and limited cytotoxicity. RSC Adv. 11: 30873-30886. [PubMed]
Heine V., Hovorková M., Vlachová M., Filipová M., Bumba L., Janoušková O., Hubálek M., Cvačka J., Petrásková L., Pelantová H., Křen V., Elling L., Bojarová P. (2021): Immunoprotective neo-glycoproteins: Chemoenzymatic synthesis of multivalent glycomimetics for inhibition of cancer-related galectin-3. Eur. J. Med. Chem. 220: 113500. [PubMed]
Hejdánková Z., Vaněk V., Sedlák F., Procházka J., Diederichs A., Kereiche S., Novotná B., Buděšínský M., Birkuš G., Grantz Šašková K., Cigler P. (2021): Lipid nanoparticles for broad-spectrum nucleic acid delivery. Adv. Funct. Mater. 31 (47): 2101391. [Wiley Online Library]
Hejtmánková A., Váňová J., Španielová H. (2021): Cell-penetrating peptides in the intracellular delivery of viral nanoparticles. In: Litwack G. (ed.): Vitamins and Hormones 117, Academic Press/Elsevier, Cambridge, MA-San Diego, CA-Oxford-London, pp. 47-76. [PubMed]
Hofreiter M., Šneberger J., Pospíšek M., Vaněk D. (2021): Progress in forensic bone DNA analysis: Lessons learned from ancient DNA. Forensic Sci. Int. -Gen. 54: 102538. [PubMed]
Horváthová L., Žárský V., Pánek T., Derelle R., Pyrih J., Motyčková A., Klápšťová V., Vinopalová M., Marková L., Voleman L., Klimeš V., Petrů M., Vaitová Z., Čepička I., Hryzáková K., Harant K., Gray M.W., Chami M., Guilvout I., Francetic O., Franz Lang B., Vlček Č., Tsaousis A.D., Eliáš M., Doležal P. (2021): Analysis of diverse eukaryotes suggests the existence of an ancestral mitochondrial apparatus derived from the bacterial type II secretion system. Nat. Commun. 12 (1): 2947. [PubMed]
Hovorková M., Kulik N., Konvalinková D., Petrásková L., Křen V., Bojarová P. (2021): Mutagenesis of catalytic nucleophile of β-galactosidase retains residual hydrolytic activity and affords a transgalactosidase. ChemCatChem 13 (21): 4532-4542. [Wiley]
Janovec V., Ryabchenko B., Škarková A., Pokorná K., Rösel D., Brábek J., Weber J., Forstová J., Hirsch I., Huérfano S. (2021): TLR4-mediated recognition of mouse polyomavirus promotes cancer-associated fibroblast-like phenotype and cell invasiveness. Cancers. 13 (9): 2076. [PubMed]
Kaštánková I., Štach M., Žižková H., Ptáčková P., Šmilauerová K., Mucha M., **Šroller V., Otáhal P. (2021): Enzymatically produced piggyBac transposon vectors for efficient non-viral manufacturing of CD19-specific CAR T cells. Mol. Ther.-Methods Clin. Dev. 23: 119-127. [PubMed]
Kirdajová D., Valihrach L., Valný M., Kriška J., Krociánová D., Benešová S., Abaffy P., Žucha D., Klassen R., Kolenicová D., Honsa P., Kubista M., Anděrová M. (2021): Transient astrocyte-like NG2 glia subpopulation emerges solely following permanent brain ischemia. Glia 69 (11): 2658-2681. [PubMed]
Klempt P., Brzoň O., Kašný M., Kvapilová K., Hubáček P., Briksi A., Bezdíček M., Koudeláková V., Lengerová M., Hajdúch M., Dřevínek P., Pospíšilová Š., Kriegová E., Macek M., Kvapil P. (2021): Distribution of SARS-CoV-2 lineages in the Czech Republic, analysis of data from the first year of the pandemic. Microorganisms 9 (8): 1671. [PubMed]
Koběrská M., Veselá L., Vimberg V., Lenart J., Veselá J., Kamenik Z., Janata J., Balíková Novotná G. (2021): Beyond self-resistance: ABCF ATPase LmrC is a signal-transducing component of an antibiotic-driven signaling cascade accelerating the onset of lincomycin biosynthesis. mBio 12 (5): e0173121. [PubMed]
Kopecký J., Rapoport D., Sarikhani E., Šťovíček A., Patrmanová T., Sagová-Marečková M. (2021): Micronutrients and soil microorganisms in the suppression of Potato common scab. Agronomy-Basel 11: 383. [MDPI]
Kropáčková T., Mann H., Růžičková O., Šléglová O., Vernerová L., Horváthová V., Tomčík M., Pavelka K., Vencovský J., Šenolt L. (2021): Clusterin serum levels are elevated in patients with early rheumatoid arthritis and predict disease activity and treatment response. Sci. Rep. 11 (1): 11525. [PubMed]
Kropáčková T., Vernerová L., Štorkánová H., Horváthová V., Vokurková M., Klein M., Oreská S., Špiritović M., Heřmánková B., Kubínová K., Cerezo L.A., Kryštůfková O., Mann H., Ukropec J., Ukropcová B., Zámečník J., Tomčík M., Vencovský J., Šenolt L. (2021): Clusterin is upregulated in serum and muscle tissue in idiopathic inflammatory myopathies and associates with clinical disease activity and cytokine profile. Clin. Exp. Rheumatol. 39 (5): 1021-1032. [PubMed]
Látrová K., Havlová N., Večeřová R., Pinkas D., Bogdanová K., Kolář M., Fišer R., Konopásek I., Do Pham D.D., Rejman D., Mikušová G. (2021): Outer membrane and phospholipid composition of the target membrane affect the antimicrobial potential of first- and second-generation lipophosphonoxins. Sci. Rep. 11 (1): 10446. [PubMed]
Le T., Van Nguyen P., Wilkinson D. (2021): Nebulized saline produced by ultrasonic humidifiers should be considered as an option for COVID-19. Immunogenome Res. 17 (1): 185. [ResearchGate]
Lenártová M., Těšínská B., Janatová T., Hřebíček O., Myšák J., Janata J., Najmanová L. (2021): The oral microbiome in periodontal health. Front. Cell. Infect. Microbiol. 11: 629723. [PubMed]
Lepesheva A., Osičková A., Holubová J., Jurnečka D., Knoblochová S., Espinosa-Vinals C., Bumba L., Skopová K., Fišer R., Osička R., Šebo P., Mašín J. (2021): Different roles of conserved tyrosine residues of the acylated domains in folding and activity of RTX toxins. Sci Rep. 11 (1): 19814. [PubMed]
Liďák T., Baloghová N., Kořínek V., Sedláček R., Balounová J., Kašpárek P., Čermák L. (2021): CRL4-DCAF12 ubiquitin ligase controls MOV10 RNA helicase during spermatogenesis and T cell activation. Int. J. Mol. Sci. 22 (10): 5394. [PubMed]
Lobo de Figueiredo-Pontes L., Adamcová M.K., Grušanovič S., Kuzmina M., Aparecida Lopes I., Fernandes de Oliveira Costa A., Zhang H., Strnad H., Lee S., Moudrá A., Jonášová A.T., Zidka M., Welner R.S., Tenen D.G., Alberich-Jorda M. (2021): Improved hematopoietic stem cell transplantation upon inhibition of natural killer cell-derived interferon-gamma. Stem Cell Reports 16 (8): 1999-2013. [PubMed]
Lubyová B., Tikalová E., Krulová K., Hodek J., Zábranský A., Hirsch I., Weber J. (2021): ATM-dependent phosphorylation of hepatitis B core protein in response to genotoxic stress. Viruses-Basel 13 (12): 2438. [PubMed]
Lužná V., Liška K., Sládek M., Sumová A. (2021): Hormonal fine-tuning of clock in decidual region of mouse placenta by dopamine, melatonin, insulin, leptin and ghrelin. Placenta 108: 55-63. [PubMed]
Mészáros Z., Nekvasilová P., Bojarová P., Křen V., Slámová K. (2021): Advanced glycosidases as ingenious biosynthetic instruments. Biotechnol. Adv. 49: 107733. [PubMed]
Mészáros Z., Nekvasilová P., Bojarová P., Křen V., Slámová K. (2021): Reprint of: Advanced glycosidases as ingenious biosynthetic instruments. Biotechnol. Adv. 51: 107820. [PubMed]
Mičková A., Kharaishvili G., Kurfurstová D., Gachechiladze M., Král M., Vacek O., Pokrývková B., Mistrík M., Souček K., Bouchal J. (2021): Skp2 and Slug are coexpressed in aggressive prostate cancer and inhibited by neddylation blockade. Int. J. Mol. Sci. 22 (6): 2844. [PubMed]
Nahácka Z., Zobalová R., Dubišová M., Rohlena J., Neužil J. (2021): Miro proteins connect mitochondrial function and intercellular transport. Crit. Rev. Biochem. Mol. Biol. 56 (4): 401-425. [PubMed]
Najmanová L., Sabová L., Lenártová M., Janatová T., Myšák J., Větrovský T., Těšínská B., Balíková Novotná G., Koberská M., Broukal Z., Dušková J., Podzimek S., Janata J. (2021): R/G Value-A numeric index of individual periodontal health and oral microbiome dynamics. Front. Cell Infect. Microbiol. 11: 602643. [PubMed]
Němcová J., Černá K., Rob F., Šmahelová J., Třešňák Hercogová J., Marx J., Traxmandlová I., Ondič O. (2021): Prevalence of high-risk human papillomavirus DNA and mRNA and its association with abnormal anal cytology in the Czech male anal cancer screening cohort. Diagn. Cytopathol. 49 (11): 1188-1195. [PubMed]
Novotná B., Holá L., Staś M., Gutten O., Smola M., Zavřel M., Vavřina Z., Buděšínský M., Liboska R., Chevrier F., Dobiáš J., Bouřa E., Rulíšek L., Birkuš G. (2021): Enzymatic synthesis of 3'-5', 3'-5' cyclic dinucleotides, their binding properties to the stimulator of interferon genes adaptor protein, and structure/activity correlations. Biochemistry 60 (48): 3714-3727. [PubMed]
Nunvář J., Pagáčová L., Vojtěchová Z., Azevedo N.T.D., Šmahelová J., Saláková M., Tachezy R. (2021): Lack of conserved miRNA deregulation in HPV-induced squamous cell carcinomas. Biomolecules 11 (5): 764. [PubMed]
Oliver-Guimerá A., Hejtmánková A., Jackson K., Pesavento P.A. (2021): A polyomavirus detected in American black bear (Ursus americanus). Arch. Virol. 166 (5): 1521-1524. [PubMed]
Palková Z, Váchová L. (2021): Spatially structured yeast communities: Understanding structure formation and regulation with omics tools. Comput. Struct. Biotechnol. J. 19: 5613-5621. [PubMed]
Pekárková K., Soukup J., Kostelanská M., Širc J., Straňák Z., Holada K. (2021): Cord blood extracellular vesicles analyzed by flow cytometry with thresholding using 405 nm or 488 nm laser leads to concurrent results. Diagnostics 11 (8): 1320. [PubMed]
Piataková A., Poláková I., Šmahelová J., Johari S.D., Nunvář J., Šmahel M. (2021): Distinct responsiveness of tumor-associated macrophages to immunotherapy of tumors with different mechanisms of Major Histocompatibility Complex Class I downregulation. Cancers 13 (12): 3057. [PubMed]
Pimková Polidarová M., Břehová P., Kaiser M.M., Smola M., Dračínský M., Smith J., Marek A., Dejmek M., Šála M., Gutten O., Rulíšek L., Novotná B., Brázdová A., Janeba Z., Nencka R., Bouřa E., Páv O., Birkuš G. (2021): Synthesis and biological evaluation of phosphoester and phosphorothioate prodrugs of STING agonist 3',3'-c-di(2'F,2'dAMP). J. Med. Chem. 64 (11): 7596-7616. [PubMed]
Plocek V., Fadrhonc K., Maršíková J., Váchová L.*, Pokorná A., Hlaváček O., Wilkinson D., Palková Z. (2021): Mitochondrial retrograde signaling contributes to metabolic differentiation in yeast colonies. Int. J. Mol. Sci. 22 (11): 5597. [PubMed]
Pokrývková B., Šmahelová J., Dalewská N., Grega M., Vencálek O., Šmahel M., Nunvář J., Klozar J., Tachezy R. (2021): ARG1 mRNA level is a promising prognostic marker in head and neck squamous cell carcinomas. Diagnostics 11: 628. [PubMed]
Prajzlerová K., Kryštůfková O., Hánová P., Horváthová V., Gregová M., Pavelka K., Vencovský J., Šenolt L., Filková M. (2021): High miR-451 expression in peripheral blood mononuclear cells from subjects at risk of developing rheumatoid arthritis. Sci. Rep. 11 (1): 4719. [PubMed]
Reyes Lerma A.C., Šťáhlavský F., Seiter M., Carabajal Paladino L.Z., Divišová K., Forman M., Sember A., Král J. (2021): Insights into the karyotype evolution of Charinidae, the early-diverging clade of whip spiders (Arachnida: Amblypygi). Animals. 11 (11): 3233. [PubMed]
Ryabchenko B., Soldatova I., Šroller V., Forstová J., Huérfano S. (2021): Immune sensing of mouse polyomavirus DNA by p204 and cGAS DNA sensors. FEBS J. 288 (20): 5964-5985 [PubMed]
Saláková M. (2021): Možnosti diagnostiky lidských polyomavirů v klinické praxi [Diagnostic options for human polyomaviruses in clinical practice]. Epidemiol. Mikrobiol. Imunol. 70 (3): 178-188. [PubMed]
Štafl K., Trávníček M., Kučerová D., Pecnová Ľ., Krchlíková V., Gáliková E., Stepanets V., Hejnar J., Trejbalová K. (2021): Heterologous avian system for quantitative analysis of Syncytin-1 interaction with ASCT2 receptor. Retrovirology 18 (1): 15. [PubMed]
Šťastná-Marková M., Hamšíková E., Hainz P., Hubáček P., Kroutilová M., Kryštofová J., Ludvíková V., Musil J., Pecherková P., Saláková M., Šroller V., Vydra J., Němečková Š. (2021): Pretransplant BK virus-specific T-cell-mediated immunity and serotype specific antibodies may have utility in identifying patients at risk for BK virus-associated haemorrhagic cystitis after allogeneic HSCT. Vaccines 9 (11): 1226 [PubMed]
Štorchová R., Burdová K., Pálek M., Medema R.H., Macůrek L. (2021): A novel assay for screening WIP1 phosphatase substrates in nuclear extracts. FEBS J. 288 (20): 6035-6051. [PubMed]
Tláskal V., Brabcová V., Větrovský T., Jomura M., López-Mondéjar R., Oliveira Monteiro L.M., Saraiva J.P., Human Z.R., Cajthaml T., Nunes da Rocha U., Baldrian P. (2021): Complementary roles of wood-Inhabiting fungi and bacteria facilitate deadwood decomposition. mSystems 6 (1): e01078-20. [PubMed]
Vacková J., Poláková I., Johari S.D., Šmahel M. (2021): CD80 expression on tumor cells alters tumor microenvironment and efficacy of cancer immunotherapy by CTLA-4 blockade. Cancers 13 (8): 1935. [PubMed]
Vázquez M.M., Ávila Herrera I.M., Just P., Reyes Lerma A.C., Chatzaki M., Heller T.L., Král J. (2021): A new opilioacarid species (Parasitiformes: Opilioacarida) from Crete (Greece) with notes on its karyotype. Acarologia 61 (3): 548-563. [Acarologia]
Volek M., Kolešníková S., Švehlová K., Srb P., Sgallová R., Streckerová T., Redondo J.A., Veverka V., Curtis E.A. (2021): Overlapping but distinct: a new model for G-quadruplex biochemical specificity. Nucleic Acids Res. 49 (4): 1816-1827. [PubMed]
Vonka V., Hirsch I. (2021): Prophylactic vaccines against cancers of non-infectious origin: a dream or a real possibility? Cent. Eur. J. Public Health 29 (4): 247-258. [PubMed]
Publications only in Czech language are excluded from this list.