- Major research subjects at the Department of Botany
- Research of the Phycological group
- Research of the Mycological group (only in Czech)
- Research at the Unit of pland ecology
- Research at the vascular plants unit (only in Czech)
Presentations of some grant projects and research directions
- Algal speciation & evolution
- Silica-scaled Chrysophytes of the Czech Republic: Project of Phycological Laboratory
- The Cape Flora
- Plant ecological genomics
- Lichen Symbiosis
- Lab Allience
- Laboratory of Quantitative Ecology
- Karl Rudolph's laboratory for paleoecology
Novitates journal
Novitates Botanicae Universitatis Carolinae was an open access journal publishing original peer-reviewed research articles in all branches of botany (including mycology) and plant ecology. The journal was established in 1982 and terminated in 2009.