The Department of Organic Chemistry offers and provides quality teaching of organic chemistry at all levels of study from undergraduate to doctoral. During the bachelor's degree students are introduced to the fundamentals of organic chemistry and heterocyclic chemistry. They then deepen their knowledge and understanding in courses such as organic synthesis and a number of other specialized courses in the follow-up master's degree. The Department of Organic Chemistry also provides practical teaching in the Organic Practical and Advanced Organic Practical courses.

Listed student theses can be found on the SIS website

List of courses taught in the Department of Organic Chemistry.

List of teachers at SIS

If you have any questions, you can always contact the study advisor, who is  Assoc. Ing. Stanislav Smrček, CSc.


Bachelor study program

Master study program

Graduate PhD study program


Advanced Courses Taught by the Department of Organic Chemistry

Course Code in SIS Name of Subject Teacher/ Garant Semester




MC270P75

Chemical Informatics in Organic Chemistry - Python Programming and Artificial Intelligence Integration

"Discover the power of scripting languages and artificial intelligence with our intensive course! This program is perfect for students looking to elevate their research skills to the next level. We will primarily focus on Python, an essential tool for working with texts, databases, and chemical formats. You'll also learn how to effectively create graphs and web applications to enhance your projects. Join us and gain practical skills that will empower you to realize your research with innovative solutions!" (written by AI)

doc. RNDr. Jindřich Jindřich, CSc. winter




MC270P100

Chemistry of Alkaloids

The course is predestined for those who want to learn about the origin, natural sources, unbelievably rich array of structure variations, biosynthesis and, especially, synthesis of alkaloids. You will hear about a crucial role of Mannich reaction and related processes in both the biosynthesis and the total synthesis of these metabolites.

doc. Ing. Josef Hájíček, CSc. winter




MC270P109

Chemistry of Heterocycles

In this course, we dive deep into the fascinating interplay between structure, reactivity, and stereochemistry of heterocyclic compounds through dynamic discussions. We'll revisit and expand upon core concepts of organic chemistry and synthesis, exploring dozens of real-world examples that demonstrate the tactics and strategies of organic synthesis. What's more, about a quarter of the featured syntheses have been personally carried out by the lecturer, ensuring you'll gain invaluable practical insights and hands-on advice. This course is an ideal way to prepare for state exams (Master's/Ph.D. programs) and to sharpen your skills in organic chemistry.
Ing. Aleš Machara, Ph.D. summer




MC270P106

Drug Delivery

The course is intended for students who want to learn more about the research, development and application of controlled drug delivery systems with a focus on the use of polymeric materials. You will learn about the basic types of drug transport systems suitable for medical applications and learn about current trends in this field, including gene therapy or diagnostics.

RNDr. Tomáš Etrych, Ph.D., DSc. winter




MC270P103 Modern Methods in Organic Synthesis Ing. Rafael Navrátil, Ph.D. summer




MC270P99

Organic Chemistry of Biological Processes

This course is focused on a detailed mechanistic description of fundamental reactions proceeding in living organisms as a parallel to the reactions known from chemical laboratory. Reactions known from the course on organic chemistry will thus be shown in new light – as part of enzyme-catalyzed processes.

prof. Ing. Pavel Kočovský summer




MC270P59

Organic Analysis

We offer you Organic Analysis Course designed for those interested in mastering the techniques and methodologies for analyzing organic compounds.

Course Highlights:

  • Fundamentals of Organic Chemistry: Understanding the basic principles of organic compounds and functional groups.
  • Analytical Techniques: Learn methods like spectroscopy (NMR, IR, UV-Vis), chromatography (GC, HPLC), and mass spectrometry.
  • Data Interpretation: Learn to interpret analytical data, identify compounds.
RNDr. Martin Štícha, Ph.D. summer




MC270P08A

Advanced NMR Methods

The main goal is to provide an overview of the rich possibilities of NMR spectroscopy and to teach the students to choose the right method for studying a particular problem. Multidimensional spectroscopy, dynamic processes, complexation and their evaluation, recent developments in NMR spectroscopy methodology.
RNDr. Zdeněk Tošner, Ph.D. winter




MC270P83 Natural products Ing. Ondřej Baszczyňski, Ph.D. summer




MC270P47

Radiopharmaceuticals

This subject will be interesting due to its highly multidisciplinary connection (associative fusion) of knowledge and discoveries from the fields of pharmacology, organic, physical, nuclear, inorganic, medicinal, general, analytical chemistry and biochemistry, physics, mathematics, toxicology, IT, AI, physiology, pathophysiology and general medicine. Practical demonstrations of the use of radiopharmaceuticals in nuclear medicine include not only the principle of preparation and use of radionuclides in a medicinal product, but also the reach and overlap of knowledge into sophisticated medical fields - especially cardiology, neurology and oncology, which are today considered promising and modern from the point of view of nuclear medicine, which uses radiopharmaceuticals on a daily basis.

RNDr. Marek Moša, Ph.D. winter




MC270P92

Retrosynthesis and Total Synthesis of Organic Compounds

In this course, you will learn how to apply the retrosynthetic approach to efficiently plan organic syntheses of complex molecules. You will also gain deeper insight into synthesising natural products and specific types of compounds, such as macrocycles.

PharmDr. Eliška Matoušová, Ph.D. winter




MC270P20 Seminar on Advanced Organic Chemistry I Ing. Ondřej Baszczyňski, Ph.D.  summer




MC270S95 Seminar from Advanced Physical Organic Chemistry doc. RNDr. Jindřich Jindřich, CSc. summer




MC270P71

Introduction to Mass Spectrometry

Unlock the Secrets of Molecular Structures with Mass Spectrometry!

Introduction to Mass Spectrometry allows you to explore one of the most powerful tools used in modern science for identifying and characterizing molecules.

In this course, you will:

  • Learn the fundamental principles of mass spectrometry (MS).
  • Gain hands-on experience in interpreting mass spectra.
  • Discover how MS is applied in fields like chemistry, pharmaceuticals, biochemistry, and environmental analysis.

Whether you're interested in drug development, environmental research, or chemical analysis, mass spectrometry is essential for uncovering the mysteries hidden in complex samples.

RNDr. Martin Štícha, Ph.D. winter




MC270P107 Introduction to Preclinical Drug Discovery Research Ing. Ondřej Baszczyňski, Ph.D. winter




MC270P40 Labelled Compounds and Their Use doc. Ing. Stanislav Smrček, CSc. summer